AI for microbial RNA (mbRNA)
I. AI models for RNA
- 👍 [Roadmap] 2025 Nature Reviews - Decoding the interactions and functions of non-coding RNA with artificial intelligence
- 2026 Nature - Advancing regulatory variant effect prediction with AlphaGenome
- 👍 2024 Nature Machine Intelligence - An interpretable RNA foundation model for exploring functional RNA motifs in plants
- New models
- RiNALMo, HydraRNA, RNAErnie, Ernie-RNA, structRFM, ...
II. Microbial RNA Struture
mbRNAfinder
- 👍 2021 Genome Biology - Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes
- 2024 Nature Biotechnology - RIP-PEN-seq identifies a class of kink-turn RNAs as splicing regulators
- Database:
Ribozyme Design
（合作： Structure lab)
- 2024 Nature Methods - [RfamGen]Deep generative design of RNA family sequences
- 👍 2024 Nature machine intelligence - A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions